I am using the ASE library to compute the distance matrix with minimum image convention. In that, I have got the positions of all atoms in the cell.
Now I wish to calculate the distance between each of them by considering the translation vector on the three Bravais lattice vectors. For example the position of atom is
pos1 = [0.11 , 0.23 , 0.156] now I have to translate this using the combinations of the three lattice vectors
(t1,t2,t3) with cell size
(a,b,c) respectively. That will be, like
pos1_1 = [0.11+a*t1 , 0.23 , 0.156] pos1_2 =...
And so on.
How can this be done with ASE?