"It rises the question, if Columb's law can be useful at such small/atomic scales?"
Coulomb's law still plays a role in the Hamiltonian of an atom, but your discussion of "force" and "acceleration" along with your use of F = ma, is only valid for macroscopic objects that are moving much more slowly than the speed of light (i.e. classical physics). Correctly describing an electron interacting with a proton requires both quantum mechanics and special relativity (and more if you would like your numbers to be so accurate that they would also correctly account for the effects of gravity, but not even the most knowledgeable researchers in the world will be incorporating the effects of gravity for such quantum mechanical systems).
There is a lot of information about the hydrogen atom available here, including the "Hamiltonian" that I mentioned in the opening sentence of this answer (see the section about the Schroedinger equation and search for the word "Hamiltonian") and you will see:
$$\tag{1}
-\frac{\hbar^2}{2\mu}\nabla^2 - \frac{e^2}{4\pi \epsilon_0 r}.
$$
You can see that the formula that you used (except for the exponent of $r$, since the Hamiltonian uses the "potential" rather than the "force"), is used in this Hamiltonian. However, if we want to know the acceleration, we do not just divide this by a mass. In quantum mechanics, we cannot predict the "acceleration" at any given time, only the "expectation value" of the acceleration, $\langle \hat{a} \rangle$, which tells you what the acceleration would be on average if you were measure the acceleration multiple times (in the theory of quantum mechanics, it is predicted that the acceleration won't be the same every time that you measure it). Finally, in this case, the electron is moving at close enough to the speed of light, that I would not trust the expectation value of the acceleration, that is obtained from the above-mentioned Schroedinger equation, and this problem is improved by incorporating the effects of special relativity using the Dirac equation. If you want to know where the "Coulomb formula" appears in the Dirac equation, it might be better for you to ask that in a separate question.
Another point that I will make, is that dividing by the mass of the hydrogen atom, would probably not even be considered the correct way to get the acceleration in classical (non-quantum-mechanical, and non-relativistic) physics. The hydrogen atom is the entire system, whereas the force that you calculated is between the proton and electron inside that system. The hydrogen atom itself is stationary, but the electron and proton will move relative to each other, so if you want the acceleration of the electron you can divide by the mass of the electron, or if you want the acceleration of the proton you can divide by the mass of the proton, or if want the acceleration of the relative motion you can divide by the reduced mass of the system.