When your lattice is primitive you have only the (0,0,0)+ set; when your lattice has some kind of centering (body- or face-centering) other sets are present, such as (1/2, 1/2, 1/2)+ or (1/2, 1/2, 0)+
It's not clear to me what you write. In the first page of the Internationl Tables you find all the symmetry operations that are listed with Roman numerals (1),(2),.... under the heading "Symmetry operations".
Then in the following page under the heading "Positions" you find the differnt Wyckoff sites. The first one represents the general position.
Consider the Space Group n°40 - Imm2.
It has 8 symmetry operations, 4 for the (0,0,0)+ set and 4 for the (1/2,1/2,1/2)+
As you have 8 symmetry operations, you will have 8 different coordinates for the general position (8e). The Table gives you only the 4 coordinates referring to the (0,0,0)+ set; so the position x,y,z is given by the operation (1) (identity) and for this reason you read (1)x,y,z. the operation (2) is the 2-fold rotation along z, and the corresponding coordinates are -x,-y,z (in other words how the point in x,y,z is moved in a new position after applying the 2-fold rotation). and so on...
The 4 remaining coordinates are obtained by simply adding (1/2,1/2,1/2) to each of the 4 above ones.