I have the following Ramachandran plot generated by Coot:

enter image description here

Notice that it has high outliers content (red dots). I want to manually drag those red dots into some part of the region. Eventually, I expect it to be reflected in the coordinates so that I can save it as a new PDB file.

How can I achieve this?


  • 1
    $\begingroup$ Asked also on other SE sites: biology.stackexchange.com/questions/108763/… chemistry.stackexchange.com/questions/166434/… and on the Coot mailing list: jiscmail.ac.uk/cgi-bin/wa-jisc.exe?A2=COOT;8b1a81dd.2207 $\endgroup$
    – marcin
    Jul 16, 2022 at 8:06
  • $\begingroup$ I gave my +1 long ago, but just came today to check how things are going? Did you figure out the answer? Are you still working on this? Let us know! I noticed that the question was deleted from Chem.SE, and got no response form Biology.SE nor the jiscmail.ac.uk mailing list. It has attracted 178 views though (I'm not sure if this was from marcin pointing the other sites to the question here, or if it was from Google searches), but surprisingly the Biology.SE version has only 62 views, so a maximum of 62 would have come from there and probably a lot less). $\endgroup$ Jan 31 at 21:43


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