Questions tagged [charged-molecules]

The tag has no usage guidance.

Filter by
Sorted by
Tagged with
6
votes
0answers
56 views

What is a “charged system” in this specific context?

I'm doing a polarization calculation for the first time. To specify one of the input parameters (the "reference point") correctly, I have to figure out if my system is "charged." ...
8
votes
1answer
54 views

Generating topology for charged molecules

I have to generate a topology file for a molecule like Sodium Triphosphate, and I do not find forcefields available in the literature. So as a starting point would like to use engines like LigParGen ...