Questions tagged [chimera-software]
Questions about or related to UCSF Chimera, the software for interactive visualization and analysis of molecular structures and related data.
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Perform energy minimization of multiple models of protein-dna complexes
Is there a software/standalone tool that can perform energy minimization of a large number of protein-dna complex models (more than 1000)?
I know of GROMACS or Chimera or the online servers but is ...
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Ligand-protein molecular docking with different protonation states
It is known that protonation states of the receptor and the ligand before and after the binding are a very important factor for the binding, as indicated by both experimental data and computational ...
- 303