Questions tagged [covid-19]
Questions about modeling related to COVID-19.
4
questions
7
votes
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Which non-commercial software can be used to dock two proteins?
I need to dock 2 proteins involved in SARS-CoV-2. They are the spike glycoprotein & membrane protein. I need them to be docked as described in the image below.
Since there are many docking ...
10
votes
2
answers
267
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What are the factors to consider before docking 2 proteins?
With no background in biological science, I need help with docking 2 proteins together. This issue is with regards to SARS-CoV-2. The 2 proteins are Spike glycoprotein and membrane protein. What are ...
6
votes
1
answer
204
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Why am I losing bonds when I use PACKMOL on two proteins?
I recently started using PACKMOL to pack a few proteins together. I wrote this PACKMOL code:
...
10
votes
1
answer
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LAMMPS code that I wrote not behaving as expected. Some issue with the group & region commands
I am actually working on SARS-CoV-2 proteins. Specifically I am trying to tribologically disengage the Spike Glycoprotein from the Membrane protein using LAMMPS. The method is to use amorphous carbon ...