Questions tagged [density-of-states]

For questions about constructing or interpreting density of states (DOS) plots

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Is there a threshold for calling an interaction nonbonding on an OPDOS (overlap population density-of-states) plot?

I am analyzing the bonding interactions within the [XeF5]- anion (B3YLP/def2-TZVP), and I am using an OPDOS (overlap population density-of-states) plot to formalize the degree of bonding/antibonding ...
Kevin Freddo's user avatar
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23 views

Issue with py4vasp and Jupyter Lab Integration on Windows 10?

I am currently working on a project involving py4vasp for crystal structure analysis. I have successfully installed py4vasp, Jupyter Lab, and Jupyter Notebook in a Conda environment. When I attempt to ...
Trivaani Yadav's user avatar
2 votes
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Error in calculating state density "dens"

I'm trying to tracking the state density of a system using Quantum Espresso by running this input file: ...
Caroline Santos 's user avatar
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What is the meaning of this co-efficient in the formula for the width of the d-band center?

In this article where they have introduced a new activity descriptor width of d-band the formula for width has a coefficient 4 $(W_d = 4\sqrt{m^c_2})$. While the same formula used in other works does ...
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3 votes
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Density of states on pymolyze

On the pymolyze program, the "calculate" panel contains : Muliken, Csquared,Density of states, overlap population and overlap DOS analysis. While performing a DOS analysis, how can we get ...
diamond999's user avatar
3 votes
1 answer
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How does one verify the density of states obtained using different smearing methods?

When calculating PDOS for an atom in a system, the corresponding electron occupancy or other parameters like the highest band edge/dos value at Fermi level/band center is different when using ...
Alukaar's user avatar
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Computing the density of states (DOS) using quantum espresso (QE) is not working, partially [closed]

I am trying to compute the density of states of rutile and anatase (TiO2) using Quantum Espresso package. A very basic calculation. However, after all the procedures (scf + nscf + dos) the resulting ...
Oscar Lopez's user avatar
1 vote
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How can I correctly create the input files for DOS and Optical Properties of a supercell using Quantum ESPRESSO?

I have a unit cell, and I want to create a 3x3x3 supercell. Please, I need guidance on how to create properly the input files for Density of States (DOS) calculation (SCF and NSCF) and the input files ...
Camilla's user avatar
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How can I calculate atomic-resolved and orbital-resolved density of states using quantum espresso

I'm calculating the DOS and PDOS of Li2CuO2 using quantum espresso. How can I calculate the atomic-resolved and orbital-resolved density of states separately? I want to individually have DOS for Li Cu ...
Mohammad Mortezaei Nobahari's user avatar
2 votes
1 answer
104 views

Why do we specifically need an SCF-generated charge density for calculating the density of states (DOS) and band structure?

Why do we specifically need an SCF-generated charge density for calculating the density of states (DOS) and band structure?
Trivaani Yadav's user avatar
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VASP DOS WARNING: charge density file is incomplete ERROR: charge density could not be read from file CHGCAR for ICHARG>10

I'm working with a system of 192 atoms. I've already relaxed the structure (with ISIF=2 and ISMEAR=0) and achieved the required ...
Trivaani Yadav's user avatar
3 votes
1 answer
314 views

Error in routine dos (1): reading dos namelist?

After the calculation of scf I ran a calculation DOS, but it gives an error as follows (I want to calculate the DOS with a hybrid potential) Input file for scf ...
SOELHADFI's user avatar
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4 votes
1 answer
318 views

How to calculate DOS and band structure using hybrid functional in Quantum Espresso?

After I run an SCF calculation with PBE0, I want to use calculation= 'nscf'/ (‘bands’) with PBE0, but this message occurs: ...
SOELHADFI's user avatar
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1 answer
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How may I make a slab surface to calculate a thin layer with Quantum ESPRESSO?

I want to know how to calculate the band structure and DOS of a thin layer of iron selenide in quantum espresso. How I can fix the input file? Is it different from Bulk matter or the same? Which ...
Boka Fikadu Banti's user avatar
4 votes
1 answer
157 views

How to compute the density of the spherical polymer using radius as a bin from the lammps trajectory?

I am working on condensate studies and I did form a globular condensate of the polymer system using lammps. I wanted to find out the number density of condensate with respect to the radius as bins to ...
kesavan's user avatar
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Why do I get very intense picks when I use PBE0 with NC PP?

I used PBE0 to get projected density of states using norm-conserving pseudopotentials with Quantum ESPRESSO. I found very intense picks (scf -> projwfc ) compared to the ones that I found using ...
Camilla's user avatar
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Issue with getting pw_bands output file for ws2

After running the input pw_bands.in file execution is not stopping even after 10hrs , and the output is not updating anything further after 1 min of the output.
PAWAN KUMAR's user avatar
6 votes
1 answer
361 views

Why do we not get DOS by summing over all the PDOS?

If we sum over all the PDOS (Projected/Partial Density of States), will we have the total DOS or simply the DOS? This was not the case in my DOS and PDOS results for a simple Al atom. I am wondering ...
Abdul Muhaymin's user avatar
2 votes
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54 views

d-band center calculation from GPAW code

How may I calculate the d-band center of metals using GPAW? In other words, how may I get the ASCII data from a gpw file?
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Do I have to repeat my previous calculations after increasing 'diago_david_ndir' in the input file of the bandstructure calculations?

After doing the convergence test, 'vc-relax' and 'scf' calculations for my material using Quantum ESPRESSO everything went well. But when I wanted to do a 'bands' calculation for bandstructure I got ...
Camilla's user avatar
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3 votes
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Calculation of DOS from DFTB+?

I am trying to calculate the DOS and PDOS for a graphene-DNA structure. Upon referring the manual, I understand that we need to have charges converged before computing the DOS. Following this, I have ...
Hemanth Haridas's user avatar
3 votes
1 answer
100 views

DOS calculation with TBTrans

I calculated the Transmission curves and the Density of States using TBTrans. In particular, if I have pristine graphene (just for the sake of the example), I obtain as Transmission curve and DOS ...
Laura's user avatar
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Does integrating PDOS give total charge of a system?

Suppose you have a two atom cubic cell, and you have calculated the atomic PDOS. Does integrating the atomic PDOS and summing them to Fermi energy give exactly the total charge of a system?
Sak's user avatar
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Inelastica Pakage [closed]

I'm use the Inelastica package to compute MPSH states and analyze the (HOMO/LUMO). For that, I run the Eigenchannels command with : ...
A H's user avatar
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2 votes
1 answer
222 views

Studying computing on HSE06 in VASP

I optimized the structure in PBE. Can anyone help me with HSE06 to calculate the optics and DOS of the material from this step? I would be grateful if you could write step by step.
Davron Kurbanov's user avatar
3 votes
0 answers
961 views

PDOS calculation with Quantum Espresso (need help for further analysis)

I have two silicon in an unit cell, for a test calculation. Each silicon as 12 electrons in the pseudopotential (1s is frozen). I have done the partial density of states (PDOS) calculation using DFT ...
Sak's user avatar
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6 votes
1 answer
358 views

Standard Practice for Relaxation, Band Structure and Density of States Calculations wrt smearing method

My question is mainly one about consistency in the smearing method used for a standard "geometry relaxation + band structure (BS) + density of states (DOS)" set of calculations. This is a ...
CW Tan's user avatar
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1 vote
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How Can I Create a 2D Silicon Carbide Structure using VESTA [closed]

I'm just getting started with VESTA. SO I'm fairly new to it. Can anyone suggest me how to build a 2D structure of Silicon Carbide (SiC)? Or any documentation would also help. Thanks .
Ikram's user avatar
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6 votes
2 answers
208 views

How can I get the projected density of states within the Green's function method?

I have this Green's function matrix $G^r= (E \mathbb{I} - \hat{H})^{-1}$ in the $|\textrm{site}\rangle\otimes|\textrm{orbital}\rangle\otimes|\textrm{spin}\rangle$ Hilbert space, and I am curious if ...
jazzloaf's user avatar
7 votes
1 answer
404 views

How to calculate the d-band from pdos data?

I am trying to find the d-band center of pdos data generated using quantum espresso 6.8. I'm aware that this maybe calculated by the formula: $$ \frac{\int_{-\infty}^\infty E \cdot \textrm{pdos}(E)dE}{...
ansonthms's user avatar
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8 votes
2 answers
446 views

Why don't we use the principal quantum number when building the projected density of state?

I am using VASP to calculate the projected DOS, but I am not sure why we aren't using the principal quantum number when doing the projection. According to the VASP wiki, LORBIT would control VASP to ...
Jack's user avatar
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4 votes
0 answers
137 views

Why extra lines in PDOS plot using xmgrace [closed]

Input file for 221 MoS2 &projwfc prefix = 'MoS2', outdir = './out', deltae = 0.1, filproj = 'MoS2-pdos.dat', Another file run ...
user4777's user avatar
7 votes
2 answers
653 views

Does SCF calculation have to be done before calculating DOS?

The standard procedure to calculate DOS or band structure is: Structure optimization, SCF calculation, non-SCF calculation. According to the vasp wiki, it is because: Mind: Since the charge density ...
Jack's user avatar
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6 votes
0 answers
501 views

How to interpret density of states and band structure of a material? [closed]

I am new on the VASP platform, and have learned how to calculate any material's DOS and Band structure. However, I don't know how to interpret these properties. Can you recommend resources that ...
Maulesh VALA's user avatar
6 votes
1 answer
705 views

How does electronic iteration work in a VASP relaxation calculation?

I am a beginner using VASP to do material modeling, and I'm confused about the following questions: How does the electronic iteration work in VASP relaxation calculation? Is the electronic iteration ...
Kevin's user avatar
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8 votes
1 answer
706 views

How to choose a proper rotation matrix and apply it to rotate unit cell about Cartesian axis

In this paper, they have rotated the unit cell using a rotation matrix, so the axes are aligned with the atomic bonds. I would like to know how they calculated that rotation matrix, and which software ...
Chi Kou's user avatar
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3 votes
1 answer
101 views

Job stops in between without showing any error

I am trying to calculate the dos of one bulk system. My dos calculation job stops in between without showing any error. Here I am attaching the link of my input dos calculation files. CONTCAR file is ...
poonam sharma's user avatar
7 votes
1 answer
362 views

Why am I getting DOS like this in Quantum ESPRESSO?

I am working on $\ce{GeHfTe}$ and in the case of a non-collinear calculation, I am getting the DOS in the attached photo. I have already relaxed my structure with VC-relax and it is converged with ...
Yash Ghoda's user avatar
5 votes
0 answers
49 views

DOS projection in alternate axis for eg and t2g contributions [closed]

I am studying doping in 0D and 2D perovskites which present tilted octahedra. It is important for me to analyze the contributions in the PDOS in terms of $e_g$ and $t_{2g}$ levels for d orbital in the ...
Rogério Gouvêa's user avatar
8 votes
1 answer
506 views

If Gaussian and Tetrahedron smearing method lead to different Fermi energies, which one is the correct?

In addition to this post, The used settings were : DOS: ISMEAR = -5 SIGMA = 0.2 (default value) BS: ISMEAR = 0 SIGMA = 0.1 Now,...
Chi Kou's user avatar
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4 votes
2 answers
383 views

What is the source of this band structure and DOS inconsistency?

Using VASP, I have conducted DOS and BS calculations of a Ti-doped $\ce{MoI3}$ monolayer using the following: POSCAR: ...
Chi Kou's user avatar
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10 votes
1 answer
437 views

What is the difference between a half metal (HM) and a spin gapless semiconductor (SGS)?

I would like to know what is the difference between a Half metal (HM) and a Spin Gapless Semiconductor (SGS) in terms of definition and DOS/Bandstructure appearance.
Chi Kou's user avatar
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7 votes
0 answers
54 views

Can the anomalous Hall effect only be applied to magnetic materials? [closed]

As I understand the anomalous Hall effect, in materials with a strong spin-orbit coupling, the intrinsic deflection effect is dominant over the side jump and skew scattering effects. In the intrinsic ...
Carmen González's user avatar
6 votes
1 answer
208 views

How can scanning tunneling microscopy images (constant current and dI/dV conductivity) be simulated? What's under the hood in software packages?

Scanning tunneling microscopy comes in several flavors; vanilla (traditional STM) is constant current where the tip height is varied to maintain a constant current at a set constant bias1 and the ...
uhoh's user avatar
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8 votes
1 answer
672 views

Can I run an nscf calculation in Quantum ESPRESSO with disk_io='none'?

I had run an SCF calculation on a crystal system in Quantum ESPRESSO and had collected the converged charge density. However, during the NSCF calculation, there is the generation of ...
UJM's user avatar
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12 votes
2 answers
7k views

What is the difference between DOS and PDOS?

I'm new to DFT. Can you please help me to understand DOS and PDOS (projected density of states) in simple wording? I only want to know some basics of these terms and how they are linked to DFT.
Areej Sahar's user avatar
6 votes
1 answer
394 views

How to make this DOS plot more smooth and add more points around Fermi level?

I have calculated and plotted the DOS for a doped monolayer 3x3x1 supercell. I want to make the plot more smooth and add more points around Fermi level. Knowing that these are my settings for the ...
Chi Kou's user avatar
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11 votes
1 answer
110 views

Can crystal field splitting energy or spin-splitting energy be detected in a density-of-states plot? How?

What are the signs (if any) in DOS plots that tell us whether we have a big or small crystal-field splitting energy, or spin-splitting energy? I already asked and got an answer to: What do we mean by ...
Chi Kou's user avatar
  • 5,653
11 votes
2 answers
371 views

What do we mean by spin-splitting energy?

What is the meaning of spin-splitting energy as described here?
Chi Kou's user avatar
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13 votes
1 answer
2k views

What does a density of states (DOS) plot show?

I have plotted the density of states using GGA-PBE exchange correlation functional for magnesium silcide but I really do not know what the equations involved are in this process, and how they relate ...
Shalini's user avatar
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