Questions tagged [membranes]
Questions about or related to membranes.
5
questions
2
votes
1
answer
137
views
How to control the thickness of lipid bilayer with GROMACS
I was trying to perform lipid bilayer MD for my protein based on GROMACS's Membrane Protein Tutorial.
I can successfully orient the protein in the lipid (turquoise) as you can see in the image below:
...
4
votes
2
answers
361
views
How to orient the protein for lipid bilayer simulation in Gromacs
I was trying to perform an MD of a protein (Mrgprx2) in a lipid bilayer.
The domain of the protein looks like this:
Thus I'd like to have the transmembrane part of the protein to be buried in lipid ...
3
votes
0
answers
43
views
How may I define the pressures of two sides of a membrane in Materials Studio? [closed]
To study SiO2, polyamide and two-layer SiO2-polyamide as the membranes in the reverse osmosis desalination of saline water; I used the Materials Studio software to model the systems. My question is:
...
5
votes
0
answers
99
views
Simulating a circuit diagram for action potential [closed]
Cable theory is a good simulation for the resting potential. It imagines patches of cell membrane lipid bilayer as capacitors and transmembrane ion channels as resistors.
But it seems this model is ...
4
votes
1
answer
41
views
Is there a site to obtain or create membranes?
I am interested in creating an enterocyte intestinal basal membrane.
So, I wonder if there is a database or site where the membrane could be downloaded or created.