Questions tagged [pdb]
For questions related to the Protein Data Bank file format, e.g. information included, converting to/from this format.
2 questions with no upvoted or accepted answers
How can I compute the performance of an application software?
I am working with protein PDB files. Application 'A' generated 3884 PDB files from the protein's CA-trace. Application 'B' did the same. So, I calculated the CRMSD values of each pair of files for ...
Why do I see a deviation when I compare PDBs using TMalign?
I constructed a PDB file of main-chain from its CA-trace using pd2_ca2main app. I used TMalign to compute RMSD values from those ...