Questions tagged [pdb]
For questions related to the Protein Data Bank file format, e.g. information included, converting to/from this format.
6
questions
3
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How to fix outliers in Ramachandran plot using Coot
I have the following Ramachandran plot generated by Coot:
Notice that it has high outliers content (red dots). I want to manually drag those
red dots into some part of the region. Eventually, I ...
- 1,542
2
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0
answers
36
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6
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1
answer
99
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How to show orientation axis in Pymol
Is there a way to show the orientation axis in Pymol?
It's something like this in VMD. I much prefer Pymol rendering.
- 1,542
8
votes
2
answers
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Limits of periodic box from pdb
I have a pdb file of some solvent molecules in a box of 20 Angstroms I have built using Tinker. I have opened the file with Chimera, Molden, Pymol and Avogadro... but I would like to see, and maybe ...
- 905
7
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1
answer
151
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6
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How to extract specific frames/model from a multi model pdb file?
I have a multi model pdb file and would like to extract the last frame or any other frame from it.
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