9 votes
Accepted

Open Source PyMol Conda Package: UnsatisfiableError

I was able to find a workaround to get open source PyMol installed on Windows. Christoph Gohlke at the University of California has a large library of precompiled Python wheel files of various ...
Tyberius's user avatar
  • 15.5k
9 votes

Open Source PyMol Conda Package: UnsatisfiableError

If you're using Linux its better if you install such packages using the apt-get method. apt-get install pymol I've encountered a similar error while installing MatPlotLib through conda. For more ...
Anoop A Nair's user avatar
  • 4,476
5 votes

How to show orientation axis in Pymol

As far as I know, there is no built in way to display the coordinate vectors. Fortunately, on the PyMOLWiki I was able to find a page with a number of scripts you can use to do this.
AwakenYesterday's user avatar
3 votes
Accepted

How to show electrostatic interactions in Pymol or other on the wanted residue

In Pymol, the polar contacts can be visualised in the following way: Enable the sequence tab by clicking on : Display -> Sequence Select both the protein and ligand in sequence tab In the right ...
Vandan Revanur's user avatar
3 votes
Accepted

Why is this source code giving incorrect RMSD value?

Edit: CA does not refer to Calcium atoms. They refer to alpha carbon atoms as defined in the PDB format. To get an accurate RMSD value between two molecules they would need to be first re-centered and ...
Vandan Revanur's user avatar
2 votes

How to show orientation axis in Pymol

The supplied answer is correct, but is script and I (a passerby, not OP or responder) wanted a copypaste in the GUI. To make the code okay for copy pasting (i.e. no multilines): ...
Matteo Ferla's user avatar
1 vote

How to find the smallest distance between 2 residues in Pymol?

Roughly these are the steps to follow: Install PyMOL software Run a python script which captures the distance between residues in PyMOL command line The script would do the following Load your ...
Vandan Revanur's user avatar

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