A primitive and conventional cell don't have different symmetries.
The primitive cell is a Wigner-Seitz cell of the same Bravais lattice; the primitive cell is the smallest choice, but the conventional cell is an equally valid choice. The primitive and conventional cells are necessarily the same space group and the choice of unitcell is conventional (c.f. the name 'conventional cell'...).
Picking a different conventional unitcell in real-space necessarily changes the reciprocal-space unitcell (Brillouin zone, BZ) in a way that totally compensates the different choice in real space.
By picking a conventional cell (assuming sufficiently converged $k$-points), you get the exact same answer for energies, forces, etc. as with a primitive cell because they are all integrals over the BZ. With a non-primitive unitcell, the BZ is smaller but there are more $k$-points 'folded' into the 1st BZ, so that all points are still counted and results are the same.
Obviously quantities like band-structure won't appear to be identical (due to BZ folding), but with some careful thought you should be able to convince yourself that the physics is the same.
Hope this helps!
Ty