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Questions to do with molecular modeling.

10 votes
3 answers
1k views

How to plot molecules with angles and bond lengths

There are many programs out there where you pass an XYZ coordinate file and the program will give you a visualization of the molecule. I want to make a plot like the one in the picture, with bond leng …
Carlos Andrés del Valle's user avatar
7 votes
Accepted

How to plot molecules with angles and bond lengths

I also manage to do the bond lengths in a slightly different way. I also used RDKit and my code is based on this discussion. I wanted to upload my answer earlier but the holidays are busy days. First …
Carlos Andrés del Valle's user avatar