New answers tagged molecular-dynamics
3
votes
Accepted
About neigh_modify and dangerous builds in LAMMPS
I want to share my experience in this topic.
In some certain scenarios, the total energy is highly related to the neighbour list construction.
If the neighbour list is updated infrequently, not only ...
5
votes
Is the following description talking about the simulation box or the boundary condition?
It's not talking about either, although it is related to those. They are restraining their system by adding a harmonic potential at the "boundary", which will prevent atoms from escaping.
A ...
Top 50 recent answers are included
Related Tags
molecular-dynamics × 380gromacs × 65
lammps × 64
molecular-modeling × 49
forcefields × 35
density-functional-theory × 23
computational-chemistry × 23
software-recommendations × 22
statistical-thermodynamics × 22
software × 20
intermolecular-forces × 18
interatomic-potentials × 18
proteins × 17
reference-request × 16
vasp × 15
polymers × 15
vmd × 15
aimd × 14
ab-initio-calculations × 13
thermodynamics × 13
molecular-interactions × 13
water × 13
one-topic-per-answer × 12
monte-carlo × 12
radial-distribution-function × 11